implementations of genie3  (MathWorks Inc)

Journal: PLoS ONE

Article Title: Inferring Regulatory Networks from Expression Data Using Tree-Based Methods

doi: 10.1371/journal.pone.0012776

Figure Lengend Snippet: AUPR and AUROC scores for DREAM4 Multifactorial challenge.

Article Snippet: To fix ideas, with our MatLab implementation of GENIE3, it takes 6.5 minutes to infer the five networks of the DREAM4 challenge and 7 hours to infer the E. coli network (with known transcription factors), in both cases with Random Forests and , where is the number of potential regulators (see later for the details of these experiments).

Techniques:

Journal: PLoS ONE

Article Title: Inferring Regulatory Networks from Expression Data Using Tree-Based Methods

doi: 10.1371/journal.pone.0012776

Figure Lengend Snippet: AUPR and AUROC p-values for DREAM4 Multifactorial challenge.

Article Snippet: To fix ideas, with our MatLab implementation of GENIE3, it takes 6.5 minutes to infer the five networks of the DREAM4 challenge and 7 hours to infer the E. coli network (with known transcription factors), in both cases with Random Forests and , where is the number of potential regulators (see later for the details of these experiments).

Techniques:

Journal: PLoS ONE

Article Title: Inferring Regulatory Networks from Expression Data Using Tree-Based Methods

doi: 10.1371/journal.pone.0012776

Figure Lengend Snippet: Overall scores of GENIE3 for DREAM4 networks.

Article Snippet: To fix ideas, with our MatLab implementation of GENIE3, it takes 6.5 minutes to infer the five networks of the DREAM4 challenge and 7 hours to infer the E. coli network (with known transcription factors), in both cases with Random Forests and , where is the number of potential regulators (see later for the details of these experiments).

Techniques:

Journal: PLoS ONE

Article Title: Inferring Regulatory Networks from Expression Data Using Tree-Based Methods

doi: 10.1371/journal.pone.0012776

Figure Lengend Snippet: Asymmetry of predicted and gold standard networks.

Article Snippet: To fix ideas, with our MatLab implementation of GENIE3, it takes 6.5 minutes to infer the five networks of the DREAM4 challenge and 7 hours to infer the E. coli network (with known transcription factors), in both cases with Random Forests and , where is the number of potential regulators (see later for the details of these experiments).

Techniques: